Onuchic, José N. : rechercher sur Z-Library

Ben-Jacob, Eshel, Lu, Mingyang, Schultz, Daniel, Onuchic, Jose' N.

Année:

2010

Langue:

english

Fichier:

PDF, 1.42 MB

english, 2010

The physics of bacterial decision making

Journal:

Frontiers in Cellular and Infection Microbiology

Année:

2014

Langue:

english

Fichier:

PDF, 5.74 MB

english, 2014

RNA as a Complex Polymer with Coupled Dynamics of Ions and Water in the Outer Solvation Sphere

Lammert, Heiko, Wang, Ailun, Mohanty, Udayan, Onuchic, José N.

Journal:

Journal of Physical Chemistry B

Année:

2018

Langue:

english

Fichier:

PDF, 2.41 MB

english, 2018

Electron tunneling pathways in proteins: influences on the transfer rate

David N. Beratan, José Nelson Onuchic

Journal:

Photosynthesis Research

Année:

1989

Langue:

english

Fichier:

PDF, 1.22 MB

english, 1989

Protein Oligomerization Through Domain Swapping: Role of Inter-molecular Interactions and Protein Concentration

Sichun Yang, Herbert Levine, José N. Onuchic

Journal:

Sichun Yang, José N. Onuchic, Angel E. García, Herbert Levine

Année:

2005

Langue:

english

Fichier:

PDF, 712 KB

english, 2005

Folding Time Predictions from All-atom Replica Exchange Simulations

Journal:

Plotkin, Steven S., Onuchic, José N.

Année:

2007

Langue:

english

Fichier:

PDF, 670 KB

english, 2007

Understanding protein folding with energy landscape theory Part I: Basic concepts

Journal:

Quarterly Reviews of Biophysics

Année:

2002

Langue:

english

Fichier:

PDF, 1.09 MB

english, 2002

[Advances in Protein Chemistry] Protein folding mechanisms Volume 53 || The energy landscape theory of protein folding: Insights into folding mechanisms and scenarios

Nelson Onuchic, José

Année:

2000

Langue:

english

Fichier:

PDF, 4.38 MB

english, 2000

Effective stochastic dynamics on a protein folding energy landscape

Yang, Sichun, Onuchic, José N., Levine, Herbert

Journal:

The Journal of Chemical Physics

Année:

2006

Langue:

english

Fichier:

PDF, 936 KB

english, 2006

Intercellular Stress Reconstitution from Traction Force Data

Zimmermann, Juliane, Hayes, Ryan L., Basan, Markus, Onuchic, José N., Rappel, Wouter-Jan, Levine, Herbert

Journal:

Biophysical Journal

Année:

2014

Langue:

english

Fichier:

PDF, 1.06 MB

english, 2014

Slipknotting upon native-like loop formation in a trefoil knot protein

Jeffrey K. Noel, Joanna I. Sułkowska and José N. Onuchic

Journal:

Sun, Li, Noel, Jeffrey K., Sulkowska, Joanna I., Levine, Herbert, Onuchic, José N.

Année:

2010

Langue:

english

Fichier:

PDF, 1.81 MB

english, 2010

Connecting Thermal and Mechanical Protein (Un)folding Landscapes

Journal:

Biophysical Journal

Année:

2014

Langue:

english

Fichier:

PDF, 1.42 MB

english, 2014

Hyper telomere recombination accelerates replicative senescence and may promote premature aging

R. Tanner Hagelstrom, Krastan B. Blagoev, Laura J. Niedernhofer, Edwin H. Goodwin, Susan M. Bailey and José N. Onuchic

Journal:

Hayes, Ryan L., Noel, Jeffrey K., Mandic, Ana, Whitford, Paul C., Sanbonmatsu, Karissa Y., Mohanty, Udayan, Onuchic, José N.

Année:

2010

Langue:

english

Fichier:

PDF, 1.44 MB

english, 2010

Generalized Manning Condensation Model Captures the RNA Ion Atmosphere

Journal:

Physical Review Letters

Année:

2015

Langue:

english

Fichier:

PDF, 240 KB

english, 2015

Toward understanding cancer stem cell heterogeneity in the tumor microenvironment

Bocci, Federico, Gearhart-Serna, Larisa, Boareto, Marcelo, Ribeiro, Mariana, Ben-Jacob, Eshel, Devi, Gayathri R., Levine, Herbert, Onuchic, José Nelson, Jolly, Mohit Kumar

Journal:

Roy, Susmita, Hennelly, Scott P, Lammert, Heiko, Onuchic, José N, Sanbonmatsu, Karissa Y

Année:

2018

Langue:

english

Fichier:

PDF, 1.80 MB

english, 2018

Magnesium controls aptamer-expression platform switching in the SAM-I riboswitch

Journal:

Nucleic Acids Research

Année:

2019

Langue:

english

Fichier:

PDF, 2.99 MB

english, 2019

Protein folding mechanisms and the multidimensional folding funnel

Nicholas D. Socci, José Nelson Onuchic, Peter G. Wolynes

Journal:

Ulrich H.E. Hansmann, Yuko Okamoto, Jose N. Onuchic

Année:

1998

Langue:

english

Fichier:

PDF, 475 KB

english, 1998

The folding funnel landscape for the peptide met-enkephalin

Journal:

John M. Finke, Patricia A. Jennings, Jennifer C. Lee, José N. Onuchic, Jay R. Winkler

Année:

1999

Langue:

english

Fichier:

PDF, 477 KB

english, 1999

Equilibrium unfolding of the poly(glutamic acid)20 helix

Journal:

Biopolymers

Année:

2007

Langue:

english

Fichier:

PDF, 609 KB

english, 2007

Effective two-state systems in bridge-mediated electron transfer. A Green function analysis

Spiros S. Skourtis, José Nelson Onuchic

Journal:

Chemical Physics Letters

Année:

1993

Langue:

english

Fichier:

PDF, 532 KB

english, 1993

The two-state reduction for electron and hole transfer in bridge-mediated electron-transfer reactions

Spiros S. Skourtis, David N. Beratan, José Nelson Onuchic

Journal:

Chemical Physics

Année:

1993

Langue:

english

Fichier:

PDF, 1.79 MB

english, 1993

Analyzing single molecule trajectories on complex energy landscapes using replica correlation functions

José Nelson Onuchic, Jin Wang, Peter G. Wolynes

Journal:

Chemical Physics

Année:

1999

Langue:

english

Fichier:

PDF, 172 KB

english, 1999

An all-atom structure-based potential for proteins: Bridging minimal models with all-atom empirical forcefields

Paul C. Whitford, Jeffrey K. Noel, Shachi Gosavi, Alexander Schug, Kevin Y. Sanbonmatsu, José N. Onuchic

Journal:

Heiko Lammert, Alexander Schug, José N. Onuchic

Année:

2009

Langue:

english

Fichier:

PDF, 757 KB

english, 2009

Robustness and generalization of structure-based models for protein folding and function

Journal:

Heiko Lammert, Peter G. Wolynes, José N. Onuchic

Année:

2009

Langue:

english

Fichier:

PDF, 767 KB

english, 2009

The role of atomic level steric effects and attractive forces in protein folding

Journal:

Joseph D. Bryngelson, José Nelson Onuchic, Nicholas D. Socci, Peter G. Wolynes

Année:

2012

Langue:

english

Fichier:

PDF, 1.08 MB

english, 2012

Funnels, pathways, and the energy landscape of protein folding: A synthesis

Journal:

William Bialek, William J. Bruno, Julian Joseph, José Nelson Onuchic

Année:

1995

Langue:

english

Fichier:

PDF, 2.98 MB

english, 1995

Quantum and classical dynamics in biochemical reactions

Journal:

Photosynthesis Research

Année:

1984

Langue:

english

Fichier:

PDF, 1.08 MB

english, 1984

The energy landscape for protein folding and possible connections to function

Margaret S. Cheung, Leslie L. Chavez, José N. Onuchic

Journal:

Polymer

Année:

2004

Langue:

english

Fichier:

PDF, 515 KB

english, 2004

Nonlinear susceptibilities of finite conjugated organic polymers

Beratan, David N., Onuchic, Jose Nelson., Perry, Joseph W.

Journal:

Journal of Physical Chemistry

Année:

1987

Langue:

english

Fichier:

PDF, 394 KB

english, 1987

Electronic shift register memory based on molecular electron-transfer reactions

Hopfield, J. J., Onuchic, Jose Nelson, Beratan, David N.

Journal:

Journal of Physical Chemistry

Année:

1989

Langue:

english

Fichier:

PDF, 1.12 MB

english, 1989

Biomolecular dynamics: order–disorder transitions and energy landscapes

Whitford, Paul C, Sanbonmatsu, Karissa Y, Onuchic, José N

Journal:

Reports on Progress in Physics

Année:

2012

Langue:

english

Fichier:

PDF, 2.61 MB

english, 2012

Massive conformation change in the prion protein: Using dual-basin structure-based models to find misfolding pathways

Jesse P. Singh, Paul C. Whitford, N. R. Hayre, José Onuchic, Daniel L. Cox

Journal:

José Nelson Onuchic, Peter G Wolynes

Année:

2012

Langue:

english

Fichier:

PDF, 1.24 MB

english, 2012

Theory of protein folding

Journal:

Current Opinion in Structural Biology

Année:

2004

Langue:

english

Fichier:

PDF, 269 KB

english, 2004

Folding a Protein in the Computer: Reality or Hope?

Angel E. Garcia, José N. Onuchic

Journal:

Structure

Année:

2005

Langue:

english

Fichier:

PDF, 45 KB

english, 2005

Protein folding funnels: the nature of the transition state ensemble

José Nelson Onuchic, Nicholas D. Socci, Zaida Luthey-Schulten, Peter G. Wolynes

Journal:

Folding and Design

Année:

1996

Langue:

english

Fichier:

PDF, 321 KB

english, 1996

Redox redux

Beratan, David N., Onuchic, José N.

Journal:

Physical Chemistry Chemical Physics

Année:

2012

Langue:

english

Fichier:

PDF, 131 KB

english, 2012

Fly-Casting in Protein−DNA Binding: Frustration between Protein Folding and Electrostatics Facilitates Target Recognition

Onuchic, José N., Levy, Yaakov, Wolynes, Peter G.

Journal:

Journal of the American Chemical Society

Année:

2007

Langue:

english

Fichier:

PDF, 147 KB

english, 2007

Topological and energetic factors: what determines the structural details of the transition state ensemble and “en-route” intermediates for protein folding? an investigation for small globular proteins

Cecilia Clementi, Hugh Nymeyer, José Nelson Onuchic

Journal:

Cecilia Clementi, Patricia A. Jennings, José N. Onuchic

Année:

2000

Langue:

english

Fichier:

PDF, 1024 KB

english, 2000

Prediction of folding mechanism for circular-permuted proteins

Journal:

Alexander Schug, José N Onuchic

Année:

2001

Langue:

english

Fichier:

PDF, 720 KB

english, 2001

From protein folding to protein function and biomolecular binding by energy landscape theory

Journal:

Current Opinion in Pharmacology

Année:

2010

Langue:

english

Fichier:

PDF, 431 KB

english, 2010

Gatekeepers in the Ribosomal Protein S6: Thermodynamics, Kinetics, and Folding Pathways Revealed by a Minimalist Protein Model

Antitsa D. Stoycheva, Charles L. Brooks III, José N. Onuchic

Journal:

Yaakov Levy, Amedeo Caflisch, Jose N. Onuchic, Peter G. Wolynes

Année:

2004

Langue:

english

Fichier:

PDF, 886 KB

english, 2004

The Folding and Dimerization of HIV-1 Protease: Evidence for a Stable Monomer from Simulations

Journal:

Année:

2004

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2004

Dynamic Coupling Between the SH2 Domain and Active Site of the COOH Terminal Src Kinase, Csk

Lilly Wong, Scot Lieser, Barbara Chie-Leon, Osamu Miyashita, Brandon Aubol, Jennifer Shaffer, Josè N. Onuchic, Patricia A. Jennings, Virgil L. Woods Jr, Joseph A. Adams

Journal:

Yaakov Levy, Samuel S. Cho, José N. Onuchic, Peter G. Wolynes

Année:

2004

Langue:

english

Fichier:

PDF, 543 KB

english, 2004

A Survey of Flexible Protein Binding Mechanisms and their Transition States Using Native Topology Based Energy Landscapes

Journal:

Melinda Roy, Leslie L. Chavez, John M. Finke, David K. Heidary, José N. Onuchic, Patricia A. Jennings

Année:

2005

Langue:

english

Fichier:

PDF, 2.19 MB

english, 2005

The Native Energy Landscape for Interleukin-1β. Modulation of the Population Ensemble through Native-state Topology

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 601 KB

english, 2005

Coupled Motions in the SH2 and Kinase Domains of Csk Control Src Phosphorylation

Lilly Wong, Scot A. Lieser, Osamu Miyashita, Meghan Miller, Kjetil Tasken, Josè N. Onuchic, Joseph A. Adams, Virgil L. Woods Jr, Patricia A. Jennings

Journal:

Shachi Gosavi, Leslie L. Chavez, Patricia A. Jennings, José N. Onuchic

Année:

2005

Langue:

english

Fichier:

PDF, 493 KB

english, 2005

Topological Frustration and the Folding of Interleukin-1β

Journal: